PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco018875.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 571aa    MW: 61496.8 Da    PI: 6.3305
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco018875.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12385430454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Aco018875.1 385 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 430
                  799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-5448234IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39381430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-19384451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-15384435No hitNo description
Gene3DG3DSA:4.10.280.104.2E-19385452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-10385430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-17387436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MMEAFMATSD LQGFPWGSSA AAFSAPPIPP AAAPPPSPPQ PFFNQEKLQQ RLQALIDGAR  60
ESWTYAIFWQ SSVDVTTGAS LLGWGDGYYK GCDDDKRKRR GPTAASAAEQ EHRKRVLREL  120
NSLISGVGGG GGGGPDDVVE EEVTDTEWFF LVSMTQSFVN GAGLPGQALF SGAPMWIAGA  180
DRLAVAQCER ARQSQVFGLH TMACVPVGSG VLELGSTDLI YHSSEVMNKI RILFNFSSSL  240
DVPSAAASWI GATSAAAGAA PPQVAAAPDQ GETDPSHQHQ HQQQHQHPHQ SFFTRELNFS  300
EFALNGSSSQ SFKPESGEVL NFGDNAPPSS STAAGAAPVK SGDSDHSDLD ASVREVESSH  360
VAEPEKPRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL  420
GDAISYINEL RSKLQSLESD KDTLQSHVES LQKERDARPA LTPASAPPPP PPPSNGVSDA  480
HGRCHGAEID VKILGHEAMI RVQCHKSNHP AARLMMALKD LDLEVYYASV SVVKDLMIQQ  540
ATVKMSSRVY SQEQLNAALC ARLTDPSPCR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-67402371195Transcription factor MYC3
4rqw_B2e-67402371195Transcription factor MYC3
4rs9_A2e-67402371195Transcription factor MYC3
4yz6_A2e-67402371195Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6665791e-119KM666579.1 Ananas bracteatus clone 51902c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010933462.10.0PREDICTED: transcription factor MYC4-like
SwissprotQ392041e-177MYC2_ARATH; Transcription factor MYC2
TrEMBLA0A0G2RLM20.0A0A0G2RLM2_9ASPA; MYC transcription factor
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-88NACL-inducible gene 1